Möbius was a descendant of Martin Luther by way of his mother.
The character of Johann Wilhelm Möbius—a particular scientist who tries to evade his own inventions by pretending to be insane—in Dürrenmatt's satiric drama The Physicists is named after him.
The asteroid 28516 Möbius is also named after him.
In StarCraft, the upgraded energy reactor of the Terran Ghost is called "Moebius Reactor"
There is a tribute to him in Serious Sam: The Second Encounter, in the form on the deathmatch map dm_mobius (which has since spawned various spin-offs such as in the Unreal Tournament series).