While Coppe's views were unpopular with Royalists, they were equally disliked by Parliamentarians, and shortly after the Fiery Flying Roll was published he was imprisoned at Newgate Prison and the book burned.
Coppe was later released and celebrated by publishing Coppe's return to the ways of righteousness, in which he retracted his previous heresies, while adding a few more. Like Lodowick Muggleton and the Diggers' leader Gerrard Winstanley, Coppe combined an egalitarian social vision with an apocalyptic religious one.
In 1657 he apparently changed his name to Dr Higham, and was buried under that name at Barnes church on August 23, 1672.